FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index15_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 24825102 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 5136410 | 2.5633392 | 5.0713906 | 1 |
| CCTGG | 5155035 | 2.5615277 | 6.0511584 | 1 |
| GAAGA | 5338715 | 2.5589917 | 5.255799 | 2 |
| CTTCT | 5424980 | 2.5428426 | 5.280498 | 1 |
| AAGAA | 5353800 | 2.503227 | 5.0719 | 2 |
| CTGGA | 5014450 | 2.4419327 | 8.292755 | 1 |
| TCCAG | 4862685 | 2.3569453 | 5.1819663 | 2 |
| CTCCT | 4793075 | 2.3023512 | 6.6296215 | 1 |
| CTGGG | 4529390 | 2.2612274 | 7.9912586 | 1 |
| CAGGA | 4545670 | 2.2232444 | 5.3405356 | 1 |
| CTTCA | 4699440 | 2.212312 | 5.4245296 | 1 |
| CTCCA | 4520865 | 2.1810107 | 7.10952 | 1 |
| CCCAG | 4384650 | 2.177932 | 6.8368683 | 1 |
| CAGAA | 4415525 | 2.1065776 | 5.05907 | 1 |
| CTCTG | 4247895 | 2.0500677 | 6.033822 | 1 |
| CTGGC | 3788705 | 1.8826009 | 5.0299745 | 1 |
| CTGAA | 3920270 | 1.8622252 | 5.2300153 | 1 |
| TGGAA | 3894430 | 1.858648 | 5.0344806 | 2 |
| CTCAG | 3608695 | 1.7491357 | 5.820999 | 1 |
| CTTGG | 3374870 | 1.6363963 | 5.1749887 | 1 |